Chromosome-level genome assembly for clubrush (Scirpus × mariqueter) endemic to China
https://doi.org/10.1038/s41597-025-05204-4
Yu Ning, Yang Li, Chun Yi Li, Jin Zhi Wang, Tian Shi Wang, Yan Chao Zheng, Yang Ying Zhan, Shen Jian Xu, Shu Bin Dong & Yi Fei Wang
Sci Data 12: 839 (2025).
genome assembly:
227.75Mb (contig N50: 3.89Mb)
NCBI (no. GCA_037678475.1)
Annotation file (https://doi.org/10.6084/m9.figshare.25479922.v1)
Bioproject ID (PRJNA1079027)
Biosample ID (SAMN40029249)
Sequence Read Archive (SRP491792)
haploid karyotype comprising:
54 pseudochromosomes (ave. 4.05Mb)
telomere to telomere level:
32 pseudochromosomes (54.12%)
predicted and annotated:
25,239 protein-coding genes
BUSCO score:
95.10%
duplicated genes:
1.70%
the origin of S. mariqueter:
need to more study for hybrid speciation
ゲノムアセンブリの手法（OIST)
https://www.oist.jp/ja/image/representation-genome-assembly-method
新規ゲノムアセンブリとアノテーション（日本生物工学学会）
https://www.sbj.or.jp/wp-content/uploads/file/sbj/9509/9509_bioinformatics.pdf